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genechip microarray data (cel files  (Thermo Fisher)


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    Thermo Fisher genechip microarray data (cel files
    Genechip Microarray Data (Cel Files, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+data+file+(cel)/10__1523_slash_JNEUROSCI__2226___22__2023_ascii32_-196-1-0
    Average 90 stars, based on 1 article reviews
    genechip microarray data (cel files - by Bioz Stars, 2026-09
    90/100 stars

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    Microarray:

    Article Title: yStreX: yeast stress expression database
    Article Snippet: .. Microarray data sets from Affymetrix gene chip (CEL file) and cDNA two-color (GPR file) platforms were retrieved from GEO and ArrayExpress database together with probe/probeset annotation file. .. The data sets were preprocessed using Piano for Affymetrix and GEO2R for cDNA platform.

    Article Title: Sialic Acid Metabolism: A Key Player in Breast Cancer Metastasis Revealed by Metabolomics.
    Article Snippet: .. Microarray CEL data files were analyzed using Transcriptome Analysis Console (TAC) software by ThermoFisher Scientific. iMage 9 | Western blot for Cmas in syngeneic Balb/c tumor-derived cell lines. ..

    Article Title: Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using Isomap, a nonlinear algorithm
    Article Snippet: The accessed data set contains 86 human genomic U133A Affymetrix arrays with 18,400 transcripts and variants on each array and 30 human 6800 arrays with 7,129 genes on each array. .. All microarray data sets were downloaded to a local computer in Affymetrix CEL file format. ..

    Article Title: Identification of hub pathways and drug candidates in gastric cancer through systems biology
    Article Snippet: .. A CEL file is a data file created by Affymetrix DNA microarray image analysis software. .. It contains the data extracted from "probes" on an Affymetrix GeneChip and can store thousands of data points, which may make the file size large.

    Article Title: Algorithms for Reconstruction of Gene Regulatory Networks from High-Throughput Gene Expression Data
    Article Snippet: .. A CEL file is a data file created by Affymetrix DNA microarray image analysis software. ..

    Software:

    Article Title: Sialic Acid Metabolism: A Key Player in Breast Cancer Metastasis Revealed by Metabolomics.
    Article Snippet: .. Microarray CEL data files were analyzed using Transcriptome Analysis Console (TAC) software by ThermoFisher Scientific. iMage 9 | Western blot for Cmas in syngeneic Balb/c tumor-derived cell lines. ..

    Article Title: Identification and New Indication of Melanin-Concentrating Hormone Receptor 1 (MCHR1) Antagonist Derived from Machine Learning and Transcriptome-Based Drug Repositioning Approaches.
    Article Snippet: Approximately 5.5 μg of labeled DNA target was hybridized to the Affymetrix GeneChip Array at 45 ◦C for 16 h. The hybridized arrays were washed and stained on a GeneChip Fluidics Station 450 and scanned using a GCS3000 scanner. .. Probe cell intensity data computation and CEL file generation were performed using Affymetrix® GeneChip Command Console® Software version 6.0+ (AGCC, www.thermofisher.com/kr/ko/home/lifescience/microarray-analysis/microarray-analysis-instruments-software-services/microarr ay-analysis-software/affymetrix-genechip-command-console-software.html, accessed on 1 September 2021). .. The CEL file is a binary format that contains the intensity calculated result for the pixel values of the DAT file and is used to extract normalized intensity to be used for actual analysis in Affymetrix® Power Tools version 2.11.4 (APT, www.thermofisher.com/kr/en/home/life-science/microarray-analysis/microarray-analy sis-partners-programs/affymetrix-developers-network/affymetrix-power-tools.html, accessed on 1 September 2021).

    Article Title: Identification of hub pathways and drug candidates in gastric cancer through systems biology
    Article Snippet: .. A CEL file is a data file created by Affymetrix DNA microarray image analysis software. .. It contains the data extracted from "probes" on an Affymetrix GeneChip and can store thousands of data points, which may make the file size large.

    Article Title: Algorithms for Reconstruction of Gene Regulatory Networks from High-Throughput Gene Expression Data
    Article Snippet: .. A CEL file is a data file created by Affymetrix DNA microarray image analysis software. ..

    Western Blot:

    Article Title: Sialic Acid Metabolism: A Key Player in Breast Cancer Metastasis Revealed by Metabolomics.
    Article Snippet: .. Microarray CEL data files were analyzed using Transcriptome Analysis Console (TAC) software by ThermoFisher Scientific. iMage 9 | Western blot for Cmas in syngeneic Balb/c tumor-derived cell lines. ..

    other:

    Article Title: Computational Tools for Stem Cell Biology
    Article Snippet: Teratoscore , Gene expression data from Affymetrix Human Genome U133 Plus 2.0 Array (.CEL file) , Human , Gene expression profiles of 12 cell lines 26 tissues and cell types , Provides a quantitative estimation of pluripotency based on germ layer contribution to teratomas. , Theoretically possible to extend to RNA-Seq, qPCR. , http://benvenisty.huji.ac.il/teratoscore.php.

    Article Title: Identification and New Indication of Melanin-Concentrating Hormone Receptor 1 (MCHR1) Antagonist Derived from Machine Learning and Transcriptome-Based Drug Repositioning Approaches
    Article Snippet: Probe cell intensity data computation and CEL file generation were performed using Affymetrix ® GeneChip Command Console ® Software version 6.0+ (AGCC, www.thermofisher.com/kr/ko/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-genechip-command-console-software.html , accessed on 1 September 2021).



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    Biotechnology Information microarray raw data (.cel files) and processed data
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    Image Search Results


    Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

    Journal: BMC Genomics

    Article Title: Genomic expression during human myelopoiesis

    doi: 10.1186/1471-2164-8-264

    Figure Lengend Snippet: Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

    Article Snippet: In particular, raw microarray data (Affymetrix .CEL files) were obtained for a total of 24 samples from 8 different cell types of all myelopoietic lineages, representing a reference dataset for a comprehensive analysis of genomic expression during cell differentiation.

    Techniques: Expressing, Microarray